If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ), 'gf_id' => 'HOM05D000915', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000915' ), 'data_identifier' => 'HOM05D000915', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000915', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '656', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A04p10370' => 'bna', 'A04p13110' => 'bna', 'A04p15720' => 'bna', 'A04p20150' => 'bna', 'A04p35140' => 'bna', 'A06p06270' => 'bna', 'A07p32910' => 'bna', 'A08p08240' => 'bna', 'A10p12000' => 'bna', 'Aa31LG1G29370' => 'aar', 'Aa31LG2G19910' => 'aar', 'Aa31LG3G1570' => 'aar', 'Aa31LG9G1500' => 'aar', 'Aa31LG9G17740' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.1276' => 'aag', 'Actinidia03269' => 'ach', 'Actinidia04976' => 'ach', 'Actinidia19657' => 'ach', 'Actinidia21079' => 'ach', 'Actinidia24855' => 'ach', 'Actinidia33051' => 'ach', 'Actinidia40014' => 'ach', 'Ah.02g124820' => 'amhyb', 'Ah.04g159450' => 'amhyb', 'Ah.11g046040' => 'amhyb', 'Ah.11g046050' => 'amhyb', 'Ah.15g093710' => 'amhyb', 'AL159U10030' => 'aly', 'AL2G22650' => 'aly', 'AL2G22660' => 'aly', 'AL2G22670' => 'aly', 'AL2G22680' => 'aly', 'AL39U10130' => 'aly', 'AL3G29380' => 'aly', 'AL4G47530' => 'aly', 'AL6G53110' => 'aly', 'AL7G45580' => 'aly', 'AL7G49830' => 'aly', 'AL8G30170' => 'aly', 'Aqoxy2G03131' => 'aox', 'Aqoxy2G04183' => 'aox', 'Aqoxy3G00939' => 'aox', 'Aqoxy3G03054' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0KV6DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.0X3R4P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.11QJS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.27DD1R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B6931F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVJ23X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF93XK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IU518F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J64BKK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR1ZKD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KT368I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NG8VEG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PPF7MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TGAQ0L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y10K0M' => 'arhy', 'AT1G51150' => 'ath', 'AT1G65630' => 'ath', 'AT1G65640' => 'ath', 'AT2G47940' => 'ath', 'AT3G16540' => 'ath', 'AT3G16550' => 'ath', 'AT5G36950' => 'ath', 'AT5G40200' => 'ath', 'AT5G40560' => 'ath', 'AT5G54745' => 'ath', 'ATR0686G021' => 'atr', 'ATR0706G098' => 'atr', 'ATR0743G105' => 'atr', 'ATR0743G116' => 'atr', 'ATR1149G128' => 'atr', 'Atru.chr10.103' => 'acertr', 'Atru.chr10.104' => 'acertr', 'Atru.chr10.122' => 'acertr', 'Atru.chr5.1280' => 'acertr', 'Atru.chr6.2172' => 'acertr', 'Atru.chr9.2425' => 'acertr', 'AUR62000250' => 'cqu', 'AUR62006595' => 'cqu', 'AUR62008261' => 'cqu', 'AUR62008262' => 'cqu', 'AUR62008263' => 'cqu', 'AUR62031021' => 'cqu', 'AUR62031022' => 'cqu', 'AUR62031023' => 'cqu', 'AUR62031024' => 'cqu', 'AUR62034617' => 'cqu', 'AUR62035288' => 'cqu', 'AUR62036655' => 'cqu', 'BcaB03g15326' => 'bca', 'BcaB03g15327' => 'bca', 'BcaB04g17868' => 'bca', 'BcaB06g27047' => 'bca', 'BcaB06g27048' => 'bca', 'BcaB06g27456' => 'bca', 'BcaB06g27457' => 'bca', 'BcaB06g27749' => 'bca', 'BcaB06g29614' => 'bca', 'BcaB08g35833' => 'bca', 'BcaB08g35838' => 'bca', 'BcaC02g08317' => 'bca', 'BcaC02g08319' => 'bca', 'BcaC02g08824' => 'bca', 'BcaC02g09536' => 'bca', 'BcaC04g20305' => 'bca', 'BcaC04g20307' => 'bca', 'BcaC07g37538' => 'bca', 'BolC2t08292H' => 'bol', 'BolC4t25968H' => 'bol', 'BolC4t26274H' => 'bol', 'BolC4t26595H' => 'bol', 'BolC4t27114H' => 'bol', 'BolC4t27115H' => 'bol', 'BolC4t27117H' => 'bol', 'BolC4t27118H' => 'bol', 'BolC4t28784H' => 'bol', 'BolC5t32419H' => 'bol', 'BolC5t32429H' => 'bol', 'BolC5t32430H' => 'bol', 'BolC6t39006H' => 'bol', 'BolC8t47855H' => 'bol', 'BolC9t57388H' => 'bol', 'BolC9t57391H' => 'bol', 'BraA04t16708Z' => 'bra', 'BraA04t16970Z' => 'bra', 'BraA04t17205Z' => 'bra', 'BraA04t17596Z' => 'bra', 'BraA04t18950Z' => 'bra', 'BraA07t30918Z' => 'bra', 'BraA08t32842Z' => 'bra', 'BraA10t43302Z' => 'bra', 'C01p47750' => 'bna', 'C02p21520' => 'bna', 'C02p21530' => 'bna', 'C04p43880' => 'bna', 'C04p46860' => 'bna', 'C04p50020' => 'bna', 'C04p55840' => 'bna', 'C04p55860' => 'bna', 'C06p39130' => 'bna', 'C09p45160' => 'bna', 'CAN.G1146.3' => 'can', 'CAN.G1209.39' => 'can', 'CAN.G29.8' => 'can', 'CAN.G29.9' => 'can', 'CAN.G426.22' => 'can', 'CAN.G691.27' => 'can', 'CANSAT25G0242' => 'cansat', 'CANSAT64G0733' => 'cansat', 'CANSAT64G2543' => 'cansat', 'CARHR057420' => 'chi', 'CARHR057430' => 'chi', 'CARHR057440' => 'chi', 'CARHR057460' => 'chi', 'CARHR143330' => 'chi', 'CARHR216140' => 'chi', 'CARHR261420' => 'chi', 'CARHR261960' => 'chi', 'CARHR268050' => 'chi', 'CARHR268060' => 'chi', 'CARHR268070' => 'chi', 'CARHR268080' => 'chi', 'Carub.0002s1148' => 'cru', 'Carub.0004s3066' => 'cru', 'Carub.0006s2918' => 'cru', 'Carub.0006s2919' => 'cru', 'Carub.0007s3220' => 'cru', 'Carub.0007s3496' => 'cru', 'Carub.0007s3545' => 'cru', 'Carub.0008s1499' => 'cru', 'Carub.0008s1501' => 'cru', 'Ca_04132_v3' => 'car', 'Ca_10376_v3' => 'car', 'Ca_21899_v3' => 'car', 'CBR_g12798' => 'cbr', 'CBR_g12800' => 'cbr', 'CBR_g2905' => 'cbr', 'CBR_g2906' => 'cbr', 'CBR_g30063' => 'cbr', 'CBR_g50405' => 'cbr', 'Cc01_g20230' => 'ccan', 'Cc01_g20240' => 'ccan', 'Cc04_g12960' => 'ccan', 'Cc07_g02480' => 'ccan', 'Cc07_g02490' => 'ccan', 'Cc09_g04340' => 'ccan', 'Cc11_g04490' => 'ccan', 'CDE02G4599' => 'cde', 'CDE04G3425' => 'cde', 'CDE05G1821' => 'cde', 'CDE07G0549' => 'cde', 'CDE09G0704' => 'cde', 'Cfa002304' => 'cfa', 'Cfa006035' => 'cfa', 'Cfa007455' => 'cfa', 'Cfa019083' => 'cfa', 'Ciclev10014700m.g' => 'ccl', 'Ciclev10014711m.g' => 'ccl', 'Ciclev10019344m.g' => 'ccl', 'Ciclev10019366m.g' => 'ccl', 'CiPaw.03G035700' => 'cil', 'CiPaw.03G255500' => 'cil', 'CiPaw.03G255600' => 'cil', 'CiPaw.04G023400' => 'cil', 'CiPaw.07G100100' => 'cil', 'CiPaw.08G100400' => 'cil', 'CiPaw.11G030000' => 'cil', 'ClCG01G014060' => 'cla', 'ClCG09G006500' => 'cla', 'ClCG11G011090' => 'cla', 'COL.COLO4_03767' => 'col', 'COL.COLO4_08029' => 'col', 'COL.COLO4_10498' => 'col', 'COL.COLO4_24767' => 'col', 'COL.COLO4_32015' => 'col', 'COL.COLO4_37033' => 'col', 'Cpa.g.c45474' => 'cpa', 'Cpa.g.sc108.26' => 'cpa', 'Cpa.g.sc110.43' => 'cpa', 'Cpa.g.sc110.45' => 'cpa', 'Cpa.g.sc26.19' => 'cpa', 'Cpa.g.sc9.162' => 'cpa', 'Cre01.g013300' => 'cre', 'Cre02.g092000' => 'cre', 'Cre03.g200655' => 'cre', 'Cre03.g203730' => 'cre', 'Cre06.g293516' => 'cre', 'Cre13.g579901' => 'cre', 'Cre14.g617600' => 'cre', 'CsaV3_1G008290' => 'csa', 'CsaV3_2G009390' => 'csa', 'CsaV3_7G028270' => 'csa', 'CSS0005886' => 'camsi', 'CSS0019613' => 'camsi', 'CSS0025216' => 'camsi', 'CSS0027822' => 'camsi', 'DCAR_000193' => 'dca', 'DCAR_002788' => 'dca', 'DCAR_004094' => 'dca', 'DCAR_004095' => 'dca', 'DCAR_011226' => 'dca', 'DCAR_011230' => 'dca', 'DCAR_015035' => 'dca', 'DCAR_016495' => 'dca', 'DCAR_021564' => 'dca', 'DCAR_027536' => 'dca', 'Dinv03281' => 'din', 'Dinv11299' => 'din', 'Dinv20684' => 'din', 'Dinv32994' => 'din', 'Dinv35036' => 'din', 'Duzib084G1068' => 'dzi', 'Duzib114G0126' => 'dzi', 'Duzib133G1394' => 'dzi', 'Duzib147G1341' => 'dzi', 'Duzib205G1883' => 'dzi', 'Duzib211G0291' => 'dzi', 'ECA232G4456' => 'eca', 'ECA238G4792' => 'eca', 'ECA246G4001' => 'eca', 'ECA248G1218' => 'eca', 'EL10Ac4g10048' => 'bvu', 'EL10Ac5g10805' => 'bvu', 'EL10Ac5g10806' => 'bvu', 'EL10Ac5g10807' => 'bvu', 'EL10Ac7g17369' => 'bvu', 'Eucgr.H01212' => 'egr', 'Eucgr.I00006' => 'egr', 'Eucgr.I00047' => 'egr', 'Eucgr.I00049' => 'egr', 'Eucgr.I00050' => 'egr', 'Eucgr.I00089' => 'egr', 'Eucgr.I00090' => 'egr', 'Eucgr.I00092' => 'egr', 'Eucgr.I01831' => 'egr', 'Eucgr.K02868' => 'egr', 'Eucgr.L02072' => 'egr', 'Eucgr.L03693' => 'egr', 'FAN02G0262' => 'fan', 'FAN02G2693' => 'fan', 'FAN04G1070' => 'fan', 'FAN05G2223' => 'fan', 'FAN06G0272' => 'fan', 'FAN06G3265' => 'fan', 'FAN08G0612' => 'fan', 'FAN08G2163' => 'fan', 'FAN08G2381' => 'fan', 'FAN09G2112' => 'fan', 'FAN09G4278' => 'fan', 'FAN13G1999' => 'fan', 'FAN15G2455' => 'fan', 'FAN18G3154' => 'fan', 'FAN18G3383' => 'fan', 'FAN18G3639' => 'fan', 'FAN18G3758' => 'fan', 'FAN20G1662' => 'fan', 'FAN20G1810' => 'fan', 'FAN21G3809' => 'fan', 'FAN24G2753' => 'fan', 'FAN27G1755' => 'fan', 'FvH4_2g24740' => 'fve', 'FvH4_3g00010' => 'fve', 'FvH4_5g04990' => 'fve', 'FvH4_5g12000' => 'fve', 'FvH4_5g37890' => 'fve', 'FvH4_6g50350' => 'fve', 'Glyma.01G077600' => 'gma', 'Glyma.02G152400' => 'gma', 'Glyma.05G000400' => 'gma', 'Glyma.05G035300' => 'gma', 'Glyma.09G002900' => 'gma', 'Glyma.10G021800' => 'gma', 'Glyma.17G092000' => 'gma', 'Gohir.A07G061933' => 'ghi', 'Gohir.A07G061966' => 'ghi', 'Gohir.A07G062000' => 'ghi', 'Gohir.A07G062100' => 'ghi', 'Gohir.A07G062200' => 'ghi', 'Gohir.A11G068000' => 'ghi', 'Gohir.A12G008600' => 'ghi', 'Gohir.A12G090500' => 'ghi', 'Gohir.D07G066701' => 'ghi', 'Gohir.D07G066801' => 'ghi', 'Gohir.D11G071800' => 'ghi', 'Gohir.D12G008301' => 'ghi', 'Gohir.D12G087400' => 'ghi', 'Gorai.001G070400' => 'gra', 'Gorai.007G077100' => 'gra', 'Gorai.008G008100' => 'gra', 'Gorai.008G097600' => 'gra', 'GSVIVG01003912001' => 'vvi', 'GSVIVG01007803001' => 'vvi', 'GSVIVG01011007001' => 'vvi', 'GSVIVG01024782001' => 'vvi', 'GSVIVG01024784001' => 'vvi', 'GSVIVG01032512001' => 'vvi', 'HanXRQChr01g0002771' => 'han', 'HanXRQChr05g0155551' => 'han', 'HanXRQChr07g0194651' => 'han', 'HanXRQChr09g0265991' => 'han', 'Haze_04813' => 'cav', 'Haze_07477' => 'cav', 'Haze_14644' => 'cav', 'Haze_21615' => 'cav', 'Haze_24511' => 'cav', 'Hma1.2p1_0002F.1_g003040' => 'hma', 'Hma1.2p1_0002F.1_g003070' => 'hma', 'Hma1.2p1_0002F.1_g003240' => 'hma', 'Hma1.2p1_0176F.1_g077780' => 'hma', 'Hma1.2p1_0182F.1_g080760' => 'hma', 'Hma1.2p1_0252F.1_g102740' => 'hma', 'Hma1.2p1_0304F.1_g119350' => 'hma', 'Hma1.2p1_0341F.1_g130570' => 'hma', 'Hma1.2p1_0399F.1_g144180' => 'hma', 'Hma1.2p1_0399F.1_g144200' => 'hma', 'Hma1.2p1_0401F.1_g144665' => 'hma', 'Hma1.2p1_0401F.1_g144670' => 'hma', 'Hma1.2p1_0469F.1_g158840' => 'hma', 'Hma1.2p1_0543F.1_g175250' => 'hma', 'Hma1.2p1_0621F.1_g190620' => 'hma', 'Hma1.2p1_0697F.1_g204900' => 'hma', 'Hma1.2p1_0697F.1_g204910' => 'hma', 'Hma1.2p1_0806F.1_g221330' => 'hma', 'Hma1.2p1_0806F.1_g221350' => 'hma', 'Hma1.2p1_1101F.1_g257180' => 'hma', 'Hma1.2p1_1283F.1_g272830' => 'hma', 'Hma1.2p1_1599F.1_g293050' => 'hma', 'Hma1.2p1_1599F.1_g293070' => 'hma', 'Hma1.2p1_1995F.1_g310350' => 'hma', 'Hma1.2p1_2458F.1_g322510' => 'hma', 'Hma1.2p1_2883F.1_g329890' => 'hma', 'Hma1.2p1_3735F.1_g337410' => 'hma', 'HPP92_001293' => 'vpl', 'HPP92_015999' => 'vpl', 'HPP92_016057' => 'vpl', 'HPP92_018295' => 'vpl', 'HPP92_018296' => 'vpl', 'HPP92_027888' => 'vpl', 'HPP92_027889' => 'vpl', 'Hund02722' => 'sun', 'Hund05375' => 'sun', 'Hund07401' => 'sun', 'Hund12480' => 'sun', 'Lalb_Chr02g0143091' => 'lal', 'Lalb_Chr04g0264061' => 'lal', 'Lalb_Chr06g0163301' => 'lal', 'Lalb_Chr07g0182631' => 'lal', 'Lalb_Chr12g0208111' => 'lal', 'Lalb_Chr13g0297911' => 'lal', 'Lj2A1185G18' => 'lonja', 'Lj2A1185T18' => 'lonja', 'Lj2g0011952' => 'lja', 'Lj2g0014760' => 'lja', 'Lj4g0025156' => 'lja', 'Lj5g0010897' => 'lja', 'Lj7A412T33' => 'lonja', 'Lj9A451G97' => 'lonja', 'Lju50A16G14' => 'lonja', 'Lju50A16G16' => 'lonja', 'Lju50A16T18' => 'lonja', 'Lsat_1_v5_gn_2_108421' => 'lsa', 'Lsat_1_v5_gn_4_181721' => 'lsa', 'Lsat_1_v5_gn_5_17020' => 'lsa', 'Lsat_1_v5_gn_5_188780' => 'lsa', 'Lsat_1_v5_gn_8_77500' => 'lsa', 'Manes.01G213700' => 'mes', 'Manes.12G000700' => 'mes', 'Manes.14G068600' => 'mes', 'Manes.17G124100' => 'mes', 'Mapoly0005s0061' => 'mpo', 'Mapoly0024s0090' => 'mpo', 'Mapoly0093s0033' => 'mpo', 'MBI10_g16328_MAGBIO' => 'mbi', 'MCO05G290' => 'mco', 'MCO10G340' => 'mco', 'MCO11G131' => 'mco', 'MD00G1056100' => 'mdo', 'MD06G1178100' => 'mdo', 'MD06G1178200' => 'mdo', 'MD08G1000100' => 'mdo', 'MD09G1037000' => 'mdo', 'MD09G1037100' => 'mdo', 'MD11G1298100' => 'mdo', 'MD14G1184600' => 'mdo', 'MD17G1034600' => 'mdo', 'MD17G1038400' => 'mdo', 'MD17G1038500' => 'mdo', 'Medtr1g088980' => 'mtr', 'Medtr4g106730' => 'mtr', 'Medtr6g004110' => 'mtr', 'MELO3C002245.2' => 'cme', 'MELO3C008772.2' => 'cme', 'MELO3C015895.2' => 'cme', 'Migut.D00229' => 'egut', 'Migut.D01778' => 'egut', 'Migut.F02074' => 'egut', 'Migut.I00035' => 'egut', 'Migut.K01124' => 'egut', 'MSTRG.23106' => 'ama', 'MSTRG.9232' => 'ama', 'Nitab4.5_0000025g0620' => 'nta', 'Nitab4.5_0000824g0130' => 'nta', 'Nitab4.5_0001653g0160' => 'nta', 'Nitab4.5_0001724g0090' => 'nta', 'Nitab4.5_0002093g0190' => 'nta', 'Nitab4.5_0002708g0030' => 'nta', 'Nitab4.5_0004150g0040' => 'nta', 'Nitab4.5_0004150g0070' => 'nta', 'Nitab4.5_0004348g0100' => 'nta', 'Nitab4.5_0004753g0040' => 'nta', 'Nitab4.5_0012874g0020' => 'nta', 'Nn1g09427' => 'nnu', 'Nn2g11912' => 'nnu', 'Nn3g16950' => 'nnu', 'Nn3g16951' => 'nnu', 'Nn3g21277' => 'nnu', 'Nn4g22862' => 'nnu', 'Oeu002705.2' => 'oeu', 'Oeu014506.1' => 'oeu', 'Oeu031514.3' => 'oeu', 'Oeu057529.2' => 'oeu', 'Os02g0742500' => 'osa', 'Os05g0147500' => 'osa', 'Os05g0417100' => 'osa', 'Os06g0234100' => 'osa', 'Peaxi162Scf00067g00415' => 'pax', 'Peaxi162Scf00344g00048' => 'pax', 'Peaxi162Scf00496g00075' => 'pax', 'Peaxi162Scf00700g00067' => 'pax', 'Peaxi162Scf01039g00110' => 'pax', 'PGR031G3228' => 'pgr', 'PGR044G1603' => 'pgr', 'PGR119G0738' => 'pgr', 'PGR142G1186' => 'pgr', 'PGSC0003DMG400016238' => 'stu', 'PGSC0003DMG400021960' => 'stu', 'PGSC0003DMG401019374' => 'stu', 'PGSC0003DMG401024031' => 'stu', 'PGSC0003DMG402019374' => 'stu', 'Phvul.003G198000' => 'pvu', 'Phvul.004G000300' => 'pvu', 'Phvul.007G166500' => 'pvu', 'Phvul.008G153200' => 'pvu', 'Potri.002G207200' => 'ptr', 'Potri.008G079900' => 'ptr', 'Potri.012G077900' => 'ptr', 'Potri.014G135200' => 'ptr', 'Potri.015G073100' => 'ptr', 'Pp3c10_19080' => 'ppa', 'Pp3c10_19090' => 'ppa', 'Pp3c13_1020' => 'ppa', 'Pp3c13_1290' => 'ppa', 'Pp3c3_28940' => 'ppa', 'Pp3c3_290' => 'ppa', 'Pp3c8_7470' => 'ppa', 'PRCOL_00002011' => 'pco', 'PRCOL_00003729' => 'pco', 'PRCOL_00003861' => 'pco', 'Prupe.3G280500' => 'ppe', 'Prupe.3G280600' => 'ppe', 'Prupe.4G000300' => 'ppe', 'Prupe.5G177300' => 'ppe', 'Prupe.8G252400' => 'ppe', 'Psat0s470g0080' => 'psa', 'Psat1g053280' => 'psa', 'Psat2g151200' => 'psa', 'Psat4g057320' => 'psa', 'Psat6g167960' => 'psa', 'PSO017G2799' => 'pso', 'PSO063G2618' => 'pso', 'PSO170G1469' => 'pso', 'PSO170G2353' => 'pso', 'PSO170G3155' => 'pso', 'PSO210G1570' => 'pso', 'PSO445G0021' => 'pso', 'PSO478G2752' => 'pso', 'PSO675G2051' => 'pso', 'PSO675G6658' => 'pso', 'PSO732G0197' => 'pso', 'PSO732G0472' => 'pso', 'PSO832G0632' => 'pso', 'QL01p018904' => 'qlo', 'QL02p077386' => 'qlo', 'QL10p013502' => 'qlo', 'QL12p023782' => 'qlo', 'QL12p023996' => 'qlo', 'QL12p024107' => 'qlo', 'RcHm_v2.0_Chr1g0327041' => 'rch', 'RcHm_v2.0_Chr2g0170661' => 'rch', 'RcHm_v2.0_Chr2g0170671' => 'rch', 'RcHm_v2.0_Chr5g0000001' => 'rch', 'RcHm_v2.0_Chr6g0292561' => 'rch', 'RcHm_v2.0_Chr7g0194051' => 'rch', 'Rhsim01G0280000' => 'rsi', 'Rhsim05G0162100' => 'rsi', 'Rhsim05G0162400' => 'rsi', 'Rhsim06G0024600' => 'rsi', 'Rhsim06G0024700' => 'rsi', 'Rhsim06G0024800' => 'rsi', 'Rhsim08G0169400' => 'rsi', 'Rhsim10G0026000' => 'rsi', 'Rhsim13G0033800' => 'rsi', 'Rhsim13G0034800' => 'rsi', 'Rhsim13G0038200' => 'rsi', 'Rhsim13G0038400' => 'rsi', 'Rhsim13G0039900' => 'rsi', 'Rhsim13G0040800' => 'rsi', 'Rhsim13G0040900' => 'rsi', 'Rhsim13G0041000' => 'rsi', 'Rhsim13G0043500' => 'rsi', 'Rhsim13G0043700' => 'rsi', 'Sabra02G0149600' => 'sbr', 'Sabra08G0059600' => 'sbr', 'Sabra10G0135900' => 'sbr', 'Sabra12G0055700' => 'sbr', 'Sabra14G0100800' => 'sbr', 'Sabra15G0097300' => 'sbr', 'SalBow1G2499' => 'sbo', 'SalBow1G8187' => 'sbo', 'SalBow3G4022' => 'sbo', 'SalBow6G1588' => 'sbo', 'Sc05g0004630' => 'sci', 'Sc06g0002560' => 'sci', 'Sc09g0001240' => 'sci', 'Sc09g0001250' => 'sci', 'Sed0005962' => 'sed', 'Sed0006478' => 'sed', 'Sed0006542' => 'sed', 'Sed0020368' => 'sed', 'Sed0022411' => 'sed', 'SEGI_05901' => 'sgi', 'SEGI_20268' => 'sgi', 'SEGI_21124' => 'sgi', 'SEGI_21373' => 'sgi', 'SEGI_35143' => 'sgi', 'SEGI_41106' => 'sgi', 'SGA_v2.0_scaffold1610G53998' => 'sas', 'SGA_v2.0_scaffold25G10875' => 'sas', 'SGA_v2.0_scaffold4G02079' => 'sas', 'SGA_v2.0_scaffold62G21481' => 'sas', 'SGA_v2.0_scaffold696G53473' => 'sas', 'SGA_v2.0_scaffold90G27984' => 'sas', 'SMO118G0164' => 'smo', 'SMO143G0020' => 'smo', 'SMO239G0193' => 'smo', 'SMO358G0112' => 'smo', 'Solyc06g084480.3' => 'sly', 'Solyc09g074420.4' => 'sly', 'Solyc11g008850.2' => 'sly', 'Solyc12g026400.2' => 'sly', 'Solyc12g062290.2' => 'sly', 'Sopen06g035870' => 'spe', 'Sopen09g029270' => 'spe', 'Sopen11g004630' => 'spe', 'Sopen12g012030' => 'spe', 'Sopen12g025210' => 'spe', 'Sp1g29660' => 'spa', 'Sp4g29860' => 'spa', 'Sp5g20580' => 'spa', 'Sp7g01770' => 'spa', 'Sp7g05540' => 'spa', 'TAR362G0613' => 'tar', 'TAR371G0382' => 'tar', 'TAR371G0427' => 'tar', 'TAR622G0661' => 'tar', 'TAR633G2047' => 'tar', 'THA.LOC104805408' => 'tha', 'THA.LOC104805673' => 'tha', 'THA.LOC104817531' => 'tha', 'THA.LOC104823918' => 'tha', 'Thecc.01G290500' => 'tca', 'Thecc.03G007100' => 'tca', 'Thecc.04G005200' => 'tca', 'Thecc.05G132100' => 'tca', 'Thhalv10001363m.g' => 'esa', 'Thhalv10019498m.g' => 'esa', 'Thhalv10019569m.g' => 'esa', 'Thhalv10019570m.g' => 'esa', 'Thhalv10019834m.g' => 'esa', 'Thhalv10023879m.g' => 'esa', 'Thhalv10027697m.g' => 'esa', 'Thhalv10027701m.g' => 'esa', 'TPR.G16941' => 'tpr', 'TPR.G25246' => 'tpr', 'TPR.G37544' => 'tpr', 'TWI15G1135' => 'twi', 'TWI23G0247' => 'twi', 'TWI36G1482' => 'twi', 'TWI56G1083' => 'twi', 'TWI81G0842' => 'twi', 'unitig_21.g20282' => 'ugi', 'unitig_26.g9627' => 'ugi', 'unitig_37.g12277' => 'ugi', 'unitig_749.g13470' => 'ugi', 'vmacro02717' => 'vma', 'vmacro05801' => 'vma', 'vmacro14963' => 'vma', 'vmacro19368' => 'vma', 'vmacro19558' => 'vma', 'VMungo0464G1334' => 'vmu', 'VMungo0720G2626' => 'vmu', 'VMungo1215G2242' => 'vmu', 'VMungo1383G1675' => 'vmu', 'Zm00001eb134680' => 'zma', 'Zm00001eb194670' => 'zma', 'Zm00001eb254270' => 'zma', 'Zm00001eb279850' => 'zma', 'Zm00001eb285440' => 'zma', 'Zm00001eb288180' => 'zma', 'Zm00001eb341750' => 'zma', 'Zm00001eb372100' => 'zma', 'Zm00001eb391220' => 'zma', 'Zm00001eb418000' => 'zma' ) $gf_id = 'HOM05D000915' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000915' ) $data_identifier = 'HOM05D000915' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 19, 'aar' => (int) 5, 'aag' => (int) 2, 'ach' => (int) 7, 'amhyb' => (int) 5, 'aly' => (int) 12, 'aox' => (int) 4, 'arhy' => (int) 15, 'ath' => (int) 10, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 18, 'bol' => (int) 16, 'bra' => (int) 8, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 12, 'cru' => (int) 9, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 7, 'cde' => (int) 5, 'cfa' => (int) 4, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 7, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 10, 'din' => (int) 5, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 5, 'egr' => (int) 12, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 7, 'ghi' => (int) 13, 'gra' => (int) 4, 'vvi' => (int) 6, 'han' => (int) 4, 'cav' => (int) 5, 'hma' => (int) 27, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 6, 'lonja' => (int) 7, 'lja' => (int) 4, 'lsa' => (int) 5, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 1, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 3, 'cme' => (int) 3, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 11, 'nnu' => (int) 6, 'oeu' => (int) 4, 'osa' => (int) 4, 'pax' => (int) 5, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 4, 'ptr' => (int) 5, 'ppa' => (int) 7, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 13, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 18, 'sbr' => (int) 6, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 6, 'sas' => (int) 6, 'smo' => (int) 4, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 5, 'tha' => (int) 4, 'tca' => (int) 4, 'esa' => (int) 8, 'tpr' => (int) 3, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb418000' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1